Bio Imaging & Signal Processing Lab
  • BISPL News
  • Professor
  • Members
  • Research
  • Publications
  • Software
    • NIRS-SPM
    • k-t FOCUSS
    • Compressive MUSIC
    • Super-resolution Microscopy
    • Patch Low Rank MRI
    • Sparse SPM
    • ALOHA Inpainting
    • Robust ALOHA
    • ALOHA for MR Recon
    • MR Artifact Removal using Robust ALOHA
    • MR Ghost Artifact correction using ALOHA
    • Geometric GAN
  • Press
  • BISPL Hall of Fame
  • Intranet
  • Seminar
  • Imaging Summit 2017

Resume


Narrative Statement

Invited Talks

Research Grants

Lectures

Invited Talks

Plenary talk
  1. 12/19/2014  -  "Patch-based low rank and sparscity penalty for biomedical imaging",  Plenary Talk, International Conference on Inverse Problems and Related Topics (ICIP), Taipei 7/3/2011
  2.   One of the plenary speakers at “Compressive Sensing Conference: Theory and Applications," which was held July 2-4, 2011 in Beijing, China. The conference was hosted by the Beijing Institute of Technology (BIT), one of the major research universities in China.

Invited talks (International conferences)
  1. “Semi-analytic iterative framework for TV penalized cone-beam CT reconstruction”, International BASP Frontiers workshop, Villar-sur-Ollon, Switzerland, Jan 26, 2015
  2. ​“Fast live cell imaigng at nanometer resolution using annihilating filter-based low-rank Hankel matrix approach”,  Invited talk at Wavelets and Sparsity XVI, San Diego, Aug. 10, 2015
  3. 01/28/2015  -  "Semi-analytic iterative framework for TV penalized cone-beam CT reconstruction", International BASP Frontiers workshop,  Switzerland
  4. 5/13/2014  -  "Patch-based low rank penalty for dynamic medical imaging", SIAM Conf. on Imaging Science, Hongkong
  5. 11/19/2013 - “Compressed sensing for functional MRI”, China-Japan-Korea Joint Workshop on NBNI (Neurobiology and Neuronformaics), 2013, Beijing, China.
  6. 09/22/2013 - “Compressed sensing for biomedical imaging”, Northeast Asian Symposium High Performance Computing Methods and Modeling, Chengdu, China.
  7. 08/2013  - “Motion Estimation/Compensated Compressed Sensing using Patch- Based Low Rank Penalty”,Wavelets and Sparsity XV, SPIE, San Diego.
  8. 07/2013 - “Fast and accurate penalized maximum likelihood estimation of localization microscopy using Poisson noise model”, Sampling Theory and Applications (SAMPTA), Bremen, Germany
  9. 08/21/2011  - “Coherent source imaging and dynamic support tracking for inverse scattering using compressive MUSIC”, Wavelets and Sparsity XIV, SPIE, San Diego.
  10. 08/22/2011  - “Sparse dictionary learning for resting-state fMRI analysis”,Wavelets and Sparsity XIV, SPIE, San Diego.
  11. 08/22/2011   - “Compressive MUSIC for diffuse optical tomography using joint sparsity”, Fields-MITACS Conference on Mathematics of Medical Imaging, June 20-24, 2011, hosted by the Fields Institute, held at the University of Toronto
  12. 03/2011  - “High resolution dynamic MRI using sparse Bayesian learning”, Invited Talk at Special Session for Compressed Sensing for Biomedical Imaging, IEEE Symposium on Biomedical Imaging (ISBI), Chicago
  13. 01/18/2011  - “Fully 3D iterative scatter-corrected OSEM for HRRT PET using GPU”, Invited Talk at International Forum on Medical Imaging in Asia (IFMIA), Okkinawa, Japan
  14. 06/07/2010  - “NIRS-SPM: statistical parameter mapping for near-infrared spectroscopy”, Invited Talk atOrganization ofHuman BrainMapping (OHBM), Barcelona
  15. 05/27/2009  - “Quantitative imaging of neurohemodynamics using NIRS-SPM”, Invited Talk at Asia Pacific Biophotonics Symposium, Jeju Island.
  16. 09/06/2009  - “Single channel exact 3-D blind image deconvolution from cylinderically symmetic blur kernel” , Invited Talk at , Annual International Conference of the IEEE Engineering inMedicine and Biology Society,Miniapolis, MN
  17. ​01/2009  - “Compressed sensing for Bio-Imaging Applications” , Invited Talk at International Forum onMedical Imaging in Asia (IFMIA), Taipei

Invited talks (International institutes)
  1. “Sparse SPM: sparse dictionary learning in SPM framework for resting-state fMRI analysis”,  Welcome Trust Center for NeuroImaging, Univ. of College London, UK, 2015년 7월31일
  2. “Joint sparse recovery for DOT and ODT”, Invited Talk, Polytechnique Montréal, Montreal, Canada,  Oct.1, 2015
  3. 6/20/2014  -  "Motion adaptive patch-based low rank approach for compressed sensing cardiac MRI and beyond", Center for Imaging Science, Harvard Medical School, USA
  4. 4/14/2014  -  "Biomedical imaging beyond diffraction and Born limits: the role of joint sparsity",  UIUC Department Special Seminar
  5. 7/29/2013  -  “Difference of Convex functions Algorithm (DCA) for Compressed Sensing Biomedical Imaging Applications ”, Department of Electrical Engineering and Computer Science, University of Michigan, Ann Arbor, MI (Host: Jeff Fessler)
  6. 2/15/2013  - “Sparse signal processing and compressed sensing for dynamic MRI reconstruction”, Department of Radiology, University of Chicago, Chicago, IL (Host: Xiaochuan Pan)
  7. 1/8/2013  -  “Sparse signal processing and compressed sensing for dynamic MRI reconstruction”, Department of Radiology Center for Advanced Radiological Sciences (CARS), Division of Nuclear Medicine and Molecular Imaging, Harvard Medical School, Boston, MA (Host: Georges El Fakhri)
  8. 1/7/2013  -  “Sparse signal processing and compressed sensing for dynamic MRI reconstruction”, ECE Department, Tufts University, Boston, MA(Host: Eric Miller)
  9. 1/10/2013  -  “Sparse signal processing and compressed sensing for dynamic MRI reconstruction”, ECE Department,North Carolina State University,Durham, NC (Host: Dror Baron)
  10. 11/16/2012  -  “Sparse recovery for dynamic MRI and fMRI analysis’, ECE Department, University of Iowa (Host: Mathews Jacob)
  11. 11/13/2012  -  “Sparse recovery for dynamic MRI and fMRI analysis’, ECE Department, Purdue University,W. Lafayette (Host: Charles Bouman)
  12. 11/01/2012   - “Subspace greedy algorithms for joint sparse recovery”, ECE Department, Univ . of California, San Diego (Host: Bhaskar Rao)
  13. 04/27/2012   - “Subspace greedy algorithms for joint sparse recovery”, ECE Department, Ohio State University (Host: Phil Schniter)
  14. 04/20/2012  -  “Compressed sensing dynamic MRI”, BioStatistics Dept., Univ. of Wisconsin Madison, (Host: Moo K. Chung)
  15. 10/25/2011   - “NIRS-SPM: statistical parameter mapping for near infrared spectroscopy”, Univ. of Geneva, Switzerland (Host: Dimitri Van De Ville)
  16. 10/24/2011  -  “Compressed sensing for biomedical imaging applications”, ´Ecole Polytechnique F´ed´erale de Lausanne (EPFL), Switzerland (Host: MichaelUnser)
  17. 8/26/2011 “Compressed sensing dynamic imaging”,UtahCenter for Advanced Imaging Research (UCAIR), Univ. of Utah, Salt Lake City, UT, (Host: Frederic Noo)
  18. 7/29/2011  -  “ Compressive MUSIC: A missing link between compressed sensing and array signal processing for joint sparse recovery”, Queen Mary College,Univ. of London, UK (Host: Mark Plumbley)
  19. 7/28/2011  -  “NIRS-SPM: statistical parameter mapping for near infrared spectroscopy”,Wellcome Trust Centre for Neuroimaging, Univ. College London (Host:Guillaume Flandin)
  20. 04/05/2011   - “Compressive sensing dynamic MRI”, GE Applied Science Lab,Milwakee, WI (Host: Kevin King)
  21. 04/04/2011  -  “Compressive MUSIC for joint sparse recovery”,Univ. of Wisconsin Madison, (Host: Moo K. Chung)
  22. 10/18/2010  - “Compressive sensing dynamic MRI ” , Brigham and Women’s Hospital, Harvard Medical School, Boston, MA (Host: Scott Hoge)
  23. 02/18/2010  -  “Statistical toolbox for near infrared spectroscopy” , National Food Research Institute (NFRI), Tsukuba, Japan (Host: Ipp Dan)
  24. 02/17/2010  -  “NIRS-SPM: statistical toolbox for near infrared spectroscopy” , Shimadzu Corp., Tokyo, Japan
  25. 11/2007 “Beyond Nyquist: two bio-imaging applications of compressed sensing”, Univ. of Illinois at Urbana Champaign DSP Seminar (Host: Yoram Bresler)
  26. 11/2007  -  “Beyond Nyquist: two bio-imaging applications of compressed sensing”, Purdue University ECE Seminar (Host: Charles Bouman)
  27. 04/2005  -  “Nonlinear multigrid reconstruction for Bayesian diffusion optical tomography”, Harvard Medical School Mass. General Hospital (MGH) (Host: David Boas)

Invited talks & Tutorials (Domestic)
  1. “모델기반형 3D 의료영상복원관련 기술동향과 이슈”, ETRI 초청강연,  Jan. 21, 2015
  2. “A general framework for compressed sensing and parallel MRI using annihilating filter based low-rank Hankel matrix”  Institutue of Basic Science (IBS)  뇌과학이미징 연구단,  2015년 5월 20일
  3. “Multi-scale interior tomography using 1D generalized total variations”,  A3 Foresight meeting 초청강연, 2015년 6월 12일
  4. “의료영상진단기기의 발전방향” 문술대학원 미래전략대학원 초청강연, 2015년 7월29일 
  5. ​“Recent advances of compressed sensing approaches for x-ray interior imaging”, 대한의료정보과학회 초청강연, 2015년 8월28일
  6. “A unified sparse recovery and inference for fDOT using random effect model”, Invited talk, fNIRS forum, Busan,  Oct. 16, 2015
  7.  “NIRS-SPM: statistical parameter mapping for near infrared spectroscopy and its applications”,  대전한의대 초청강연, 2015년 10월28일
  8. 11/20/2014  -  "Compressed sensing for biomedical imaging", IBEC 초청강연
  9. 11/15/2014  - "A unified sparse recovery and inference framework for fDOT", 가천의대 초청강연
  10. 10/07/2014  - "Compressed sensing for neuroimaging", Korea-Swiss forum
  11. 8/30/2014  -  "Introduction to X-ray CT iterative reconstruction and compressed sensing", X-ray CT Recon Summer School at KAIST
  12. 8/08/2014  -  "Joint sparsity driven accurate reconstruction of absorption and scattering in diffuse optical tomography", Seoul 2014 ICM Satellite Conference:Imaging, Multi-scale and high contrast PDEs
  13. 8/02/2014  - "생명체속을 어떻게 들여다 볼까?" 국립과학관 초청강연
  14. 7/03/2014  -  "Compressive sensing: review and recent development", Machine Learning Summer School, KAIST
  15. 7/02/2014  - "초고해상도 바이오의료영상복원기법", Bionic Tech 2014
  16. 4/20/2014  -  "Non-iterative simultaneous reconstruction in diffuse optical tomography using joint sparsity", Beckman Laser Institute (BLI) Korea Symposium
  17. 3/28/2014  -  "Compressed sensing for dynamic MRI", 2014 ICMRI/KSMRM 초청강연
  18. 10/11/2013  -  “Compressed sensing for biomedical imaging”, Daegu-Gyeongbuk Medical Innovation Foundation.
  19. 9/13/2013   - “Compressed sensing for biomedical imaging”, Seoul National University. 
  20. 7/27/2013   - “Compressed sensing and its application to radar”, HundaiMobis.
  21. 6/25/2013   - “New frontiers in medical imaging using advance reconstruction”, Samsung Advanced Institute of Technology.
  22. 5/29/2013  -  “Sparse signal processing for fMRI analysis”, Pusan National University. 
  23. 5/28/2013   - “Joint sparse recovery for diffuse optical tomography”, Korea Electrotechnology Research Institute.
  24. 5/22/2013 “Noise robust greedy subspace method for multiple measurement vector problem”, Electronics and Telecommunications Research Institute (ETRI)
  25. 10/21/2011 “Compressed sensing for biomedical imaging applications”, Invited Talk at AnnualMeeting of Korean Society forMathematics
  26. 03/24/2011 “Scatter correction for PET and digital tomosynthesis” Samsung Advanced Institute of Technology (SAIT)
  27. 03/14/2011 “Functional NIRS: Neuroimaging at the speed of light” Ajou University School ofMedicine
  28. 02/24/2011 “Compressed sensing: review and recent development” National Institute ofMathematical ScienceWinterWorkshop
  29. 02/15/2011 “Compressive sensing: review and recent development” Electronics and Telecommunications Research Institute (ETRI)
  30. 12/03/2010 “Functional NIRS: Neuroimaging at the speed of light” KAISTWorkshop on Neuroimaging and BrainMapping
  31. 11/09/2010 “Compressive sensing for biomedical imaging” Seoul National University, Dept. of Cognitive Science
  32. 09/10/2010 “Recent trend in biomedical imaging” National Research Foundation
  33. 08/17/2010 “Compressive sensing theory” NIMS/KAIST Summer school on sampling theory and compressive sensing
  34. 06/30/2010 “Compressive sensing: theory and applications” National Institute ofMathematical Science
  35. 06/24/2010 “Compressive sensing: theory and applications” KAIST Dept. of Electrical Engineering
  36. 06/21/2010 “NIRS-SPM: Statistical parameter mapping for near-infrared spectroscopy” Seoul National Univ. Dept. of Pyschology
  37. 05/20/2010 “Compressed sensing for biomedical imaging” Yonsei University, Biometric Center
  38. 05/14/2010 “Quantification of CMRO2 without hypercapnia using NIRS and fMRI”, Invited talk at AnnualMeeting of the Korean Society of Medical & Biological Engineering
  39. 05/05/2010 “Compressed sensing: theory and applications” POSTECH, Dept. of Electrical Engineering
  40. 03/24/2010 “Tutorial on Parallel Imaging” Korean Society forMagnetic Resonance inMedicine
  41. 02/22/2010 “Compressed sensing theory” Winter workshop of Korea Information and Communications Society, Pyongchang, Korea
  42. 02/03/2010 “Compressive sensing for bio-imaging and signal processing” KAIST, Dept. Bio and Brain Engineering
  43. 12/29/2009 “Compressive sensing for biomedical imaging applications” NIMS ThematicWorkshop, EwhaWoman University
  44. 12/18/2009 “Compressed sensing: theory and applications” Seoul National University Hospital
  45. 12/08/2009 “k-t FOCUSS: A general compressive sensing framework for high resolution dynamic MRI” UNIST Compressed sensing International workshop
  46. 11/18/2009 “Compressed sensing: theory and applications” Samsung Forum10/27/2009 “Quantitative analysis of neurohemodynamics using near infrared spectroscopy” Pusan National University
  47. 10/23/2009 “Compressed sensing: theory and applications” Yonsei University, Dept. of Electrical Engineering 
  48. 10/08/2009 “Quantitative analysis of neurohemodynamics using near infrared spectroscopy” Seoul National University School ofMedicine
  49. 09/25/2009 “Compressed sensing: theory and applications for bio-imaging and signal processing” Gwangju Institute of Science & Technology (GIST)
  50. 09/18/2009 “Compressed sensing for biomedical imaging applications” KAIST, Dept. ofMathematical Science
  51. 02/17/2009 “Statistical Analysis for Optical Neuro-imaging” Seoul National University, Engineering Research Center
  52. 03/25/2009 “FastMagnetic Resonance Imaging” Yonsei School ofMedicine
  53. 08/2009 “Method for Cognitive neuroimaigng” National Research Foundation
  54. 03/2009 “Dynamic MRI” Gachon Neuro Institute 
  55. 02/2009 “Statistical Analysis for Optical Neuro Imaging” Seoul National University, International Symposium on Optical Neuralrecording
  56. 12/2008 “Compressed sensing: theory, algorithms, and applications” KAIST EECS Seminar
  57. 12/2008 “NIRS-SPM: statistical toolbox for near infrared spectroscopy” Chunnam Univ School ofMedicine, 2008. 12
  58. 10/2008 “Compressed sensing: theory, algorithms, and applications” Electronics and Telecommunications Research Institute (ETRI)
  59. 09/2008 “Tutorial on Parallel Imaging” Invited tutorial at Symposium of Korean Society forMagnetic Resonance in Medicine (KSMRM)
  60. 07/2008 “ Quantitative analysis of brain activity using NIRS imaging” Korea University, Dept. of Computer Science
  61. 06/2008 “Compressed sensing for bio-imaging” Medical Image Informatics Symposium, Yonsei University School of Medicine
  62. 05/2008 “Model free single particle reconstruction method for helical macromolecules using electron microscopy” Wonkwang University, Center for x-ray microscopy
  63. 04/2008 “Compressed sensing: theory, algorithms, and applications” Electronics and Telecommunications Research Institute (ETRI) Sensor Network Group
  64. 03/2008 “Quantitative analysis of brain activity using NIRS imaging” International Neuromodulation Symposium, Yonsei Univ. Hospital
  65. 02/2008 “Compressed sensing: theory, algorithms, and applications” Image Processing and Image Understanding (IPIU) tutorial
  66. 12/2007 “NIRS-SPM: Statistical parameter mapping for near infrared spectroscopy” Seoul SamsungMedical Center
  67. 11/2007 “Bioluminescence and Fluorescence imaging instrumentation” Korean Molecular Imaging Society Symposium
  68. 08/2007 “NIRS-SPM: Statistical ParametricMapping forNear Infrared Spectroscopy” Inje University Neuroscience Research Center
  69. 07/2007 “Non-invasive measurement of brain activity using near-infrared optical spectroscopy” IEEE International Conference on Information Acquisition(ICIA)
  70. 06/2007 “Single channel exact blind deconvolution from radially symmetric blur kernels” Optical Society of Korea Symposium
  71. 05/2007 “Signal processing for biology and medicine: from nano to macro” POSTECH Dept. of Computer Science
  72. 04/2007 “Sparse signal processing for biomedical imaging” Samsung Advanced Institute of Technology
  73. 04/2007 “Diffuse optical tomography” Korea Institute ofMechanical Science
  74. 03/2007 “Diffuse optical tomography” Korean Physics Society Spring Symposium
  75. 12/2006 “High resolution reconstruction under sparsity constraint: application to brain and dynamic MRI” Gachon Neuroscience Institute
  76. 07/2006 “Optimal space temporal sensitivity encoding for dynamic MRI” NBNI
  77. 02/2006 “Reconstruction techniques for diffuse optical tomography” Photonics conference
  78. 09/2005 “Signal processing issues in bio-medical imaging systems for fast acquisition and high resolution reconstruction” Korea Research Institute of Standards and Science (KRISS)
  79. 05/2005 “Diffuse optical tomography for molecular imaging, implementation and algorithm issues” Chonnam University BIT Research Center
  80. 05/2005 “Overview of in vivo optical molecular imaging” Optical Society of Korea, Biophotonics Symposium
  81. 04/2004 “Diffuse optical tomography for molecular imaging, implementation and algorithm issues” Chonnam UniversityMedical School
  82. 03/2005 “In-vivo optical molecular imaging: principles and signal processing issues” IEEE International Conference on Acoustics, Speech, and Signal Processing  (ICASSP), Special Session
  83. 2005 “Cardiac CT image reconstruction” Kyunghee University Impedance Imaging Research Center (IIRC)
  84. 12/2004 “In vivo optical molecular imaging” Yonsei University Dept. of Bioengineering
  85. 11/2004 “In vivo. bioluminescence imaging” KoreaMolecular Imaging Society Symposium
  86. 10/2004 “Overview of research frontiers in diagnostic imaging” Yonsei University Dept. of Bioengineering
  87. 09/2004 “Optical imaging for biomedical applications” Chonnam University, Dept. of NuclearMedicine, 2004. 9
ABOUT US
We are interested in novel bio-imaging and signal processing techniques that can greatly enhance our ability to monitor biological structures and functions. The mathematical tool of BISPL is a new signal processing theory called "compressed sensing". According to compressed sensing theory, perfect reconstruction is possible even from sampling rates dramatically smaller than the Nyquist sampling limit, as long as the non-zero spectral signal is sparse and the samples are obtained with an incoherent basis. From the bio imaging perspective, compressed sensing is a disruptive technology that challenges our current imaging principles. Therefore, our current research activities have been focused on demonstration of new proof-of-concept bioimaging tools for the aforementioned real bio-imaging applications .
CONTACT US
Bio Imaging & Signal Processing Lab. 
Dept. of Bio & Brain Engineering 
KAIST
291 Daehak-ro, Yuseong-gu
Daejeon 305-701, Korea

Copyright (c) 2014, BISPL
All Rights Reserved.

Picture
✕